Sega Dreamcast, Nintendo Gamecube.Side note: Based on comments in the article, it seems the size of the logo is a maximum of 1mm w/h.
Donkey Kong 64.
Sonic Adventure 2.
Super Mario Sunshine.
Submitted by Eliser via Youtube.
Metroid and Geist.
Submitted by Josh Britt.
Paper Mario: The Thousand Year Door.
Submitted by Chrono_blazer.
The Legend of Zelda The Wind Waker.